PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00008070-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family NF-YB
Protein Properties Length: 176aa    MW: 19203.6 Da    PI: 6.5387
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00008070-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB174.69.9e-5520113194
                  NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylk 88 
                            vre+drflPian++rimkk+lPan+ki+kdak+tvqecvsefisf+tseasdkcq+ekrkt+ngddllwa+atlGfe+y++plkvyl+
  SMil_00008070-RA_Salv  20 VREHDRFLPIANIGRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTVNGDDLLWAMATLGFEEYIAPLKVYLA 107
                            589************************************************************************************* PP

                  NF-YB  89 kyrele 94 
                            +yre +
  SMil_00008070-RA_Salv 108 RYREGD 113
                            ***965 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.4E-5117120IPR009072Histone-fold
SuperFamilySSF471131.3E-3724116IPR009072Histone-fold
PfamPF008081.2E-282690IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006158.2E-205472No hitNo description
PROSITE patternPS0068505773IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006158.2E-207391No hitNo description
PRINTSPR006158.2E-2092110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MADSPGGADG GGDQSPPSNV REHDRFLPIA NIGRIMKKAL PANGKIAKDA KDTVQECVSE  60
FISFITSEAS DKCQKEKRKT VNGDDLLWAM ATLGFEEYIA PLKVYLARYR EGDAKGPARG  120
ADGLSAKKEM TGPQLGSDAQ SRTQFGWLSH EAKSRDELFI SGYSGQFKLV DVREIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B1e-4520111192Transcription factor HapC (Eurofung)
4g92_B1e-4520111192Transcription factor HapC (Eurofung)
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011077038.13e-78PREDICTED: nuclear transcription factor Y subunit B-1-like
RefseqXP_011077039.13e-78PREDICTED: nuclear transcription factor Y subunit B-1-like
SwissprotQ8VYK42e-66NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBLA0A0N6X6V52e-77A0A0N6X6V5_SALMI; Transcription factor NFYB
STRINGVIT_13s0019g03600.t012e-73(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38880.72e-64nuclear factor Y, subunit B1